☰ Navigation Tabs
Crystal structure of di-phosphorylated human CLK1 in complex with a novel substituted indole inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z57 PDB ENTRY 1Z57
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 2.1M SODIUM MALATE PH7.0
Crystal Properties Matthews coefficient Solvent content 2.57 52.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.95 α = 90 b = 64.108 β = 118.17 c = 78.894 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 33.58 99.9 0.09 11.6 3.8 36979 25.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.9 0.61 1.8 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Z57 1.8 32 35072 1887 99.9 0.182 0.18 0.1863 0.225 0.2282 RANDOM 14.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -1.05 -0.32 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.466 r_dihedral_angle_4_deg 12.886 r_dihedral_angle_3_deg 12.718 r_scangle_it 9.659 r_scbond_it 7.597 r_dihedral_angle_1_deg 5.985 r_mcangle_it 4.651 r_mcbond_it 3.485 r_angle_refined_deg 1.404 r_angle_other_deg 1.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.466 r_dihedral_angle_4_deg 12.886 r_dihedral_angle_3_deg 12.718 r_scangle_it 9.659 r_scbond_it 7.597 r_dihedral_angle_1_deg 5.985 r_mcangle_it 4.651 r_mcbond_it 3.485 r_angle_refined_deg 1.404 r_angle_other_deg 1.004 r_symmetry_vdw_other 0.268 r_nbd_refined 0.203 r_nbd_other 0.187 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.13 r_nbtor_other 0.096 r_symmetry_vdw_refined 0.093 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2638 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing