☰ Navigation Tabs
Fast maturing red fluorescent protein, DsRed.T4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZGO PDB ENTRY 1ZGO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 100 MM HEPES, PH 7.5, 22% POLYACRYLIC ACID, 200 MM MGCL2, HANGING DROPS, RT
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.347 α = 90.07 b = 79.51 β = 96.87 c = 83.014 γ = 97.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 50 95.9 0.05 19.1 2 210765
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.64 1.7 87.9 0.14 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZGO 1.64 32.44 200192 10572 95.9 0.163 0.162 0.1605 0.197 0.1945 RANDOM 9.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.087 r_dihedral_angle_4_deg 12.282 r_dihedral_angle_3_deg 11.951 r_dihedral_angle_1_deg 6.586 r_scangle_it 3.907 r_scbond_it 2.382 r_angle_refined_deg 1.65 r_mcangle_it 1.456 r_mcbond_it 0.836 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.087 r_dihedral_angle_4_deg 12.282 r_dihedral_angle_3_deg 11.951 r_dihedral_angle_1_deg 6.586 r_scangle_it 3.907 r_scbond_it 2.382 r_angle_refined_deg 1.65 r_mcangle_it 1.456 r_mcbond_it 0.836 r_nbtor_refined 0.314 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.165 r_xyhbond_nbd_refined 0.122 r_chiral_restr 0.118 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14224 Nucleic Acid Atoms Solvent Atoms 1790 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing