X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1OJRPDB ENTRY 1OJR

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.440% ETHYLENE GLYCOLE, 0.1M TRIS (PH 7.0)
Crystal Properties
Matthews coefficientSolvent content
2.755.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 85.207α = 90
b = 85.207β = 90
c = 90.535γ = 90
Symmetry
Space GroupP 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.82093.50.067.873.8559992.32
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.894.90.372.323.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OJR1.814.9452619335893.60.2090.2080.238RANDOM28.12
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.561.56-3.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.808
r_dihedral_angle_3_deg15.278
r_dihedral_angle_4_deg13.214
r_dihedral_angle_1_deg8.6
r_scangle_it4.09
r_scbond_it2.735
r_angle_refined_deg1.875
r_mcangle_it1.63
r_mcbond_it1.111
r_nbtor_refined0.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.808
r_dihedral_angle_3_deg15.278
r_dihedral_angle_4_deg13.214
r_dihedral_angle_1_deg8.6
r_scangle_it4.09
r_scbond_it2.735
r_angle_refined_deg1.875
r_mcangle_it1.63
r_mcbond_it1.111
r_nbtor_refined0.314
r_symmetry_hbond_refined0.24
r_nbd_refined0.228
r_xyhbond_nbd_refined0.224
r_symmetry_vdw_refined0.2
r_chiral_restr0.153
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4218
Nucleic Acid Atoms
Solvent Atoms413
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing