☰ Navigation Tabs
STRUCTURE OF STRICTOSIDINE SYNTHASE IN COMPLEX WITH STRICTOSIDINE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FP8 PDB ENTRY 2FP8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.8M POTASSIUM SODIUM TARTRATE TETRAHYDRATE, 100MM HEPES-NA, 1MM TRYPTAMINE, PH 7.5,
Crystal Properties Matthews coefficient Solvent content 3.58 65.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.177 α = 90 b = 150.177 β = 90 c = 121.707 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH DOUBLE CRYSTAL SI 111 2005-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.01 20 100 0.13 21.2 11.8 20423 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.05 100 0.76 3.7 11.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2FP8 3.01 20 19336 959 100 0.194 0.192 0.1814 0.235 RANDOM 27.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.39 2.7 5.39 -8.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.402 r_scangle_it 4.619 r_scbond_it 2.965 r_angle_refined_deg 1.841 r_mcangle_it 1.18 r_mcbond_it 0.579 r_symmetry_hbond_refined 0.505 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.147
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.402 r_scangle_it 4.619 r_scbond_it 2.965 r_angle_refined_deg 1.841 r_mcangle_it 1.18 r_mcbond_it 0.579 r_symmetry_hbond_refined 0.505 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.13 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4727 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing