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Atomic resolution structure of Mn catalase from Thermus Thermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.5 pH 9.5
Crystal Properties Matthews coefficient Solvent content 2.99 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.3 α = 90 b = 132.3 β = 90 c = 132.3 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 1996-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 50 99.9 0.07 17 4 345906
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.07 99.5 0.27 3 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.05 95.35 353747 1058 99.8 0.106 0.106 0.1217 0.121 0.1369 RANDOM 9.57
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.974 r_scangle_it 3.842 r_scbond_it 2.639 r_mcangle_it 1.979 r_angle_refined_deg 1.962 r_angle_other_deg 1.676 r_mcbond_it 1.396 r_bond_other_d 0.722 r_symmetry_vdw_other 0.326 r_xyhbond_nbd_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.974 r_scangle_it 3.842 r_scbond_it 2.639 r_mcangle_it 1.979 r_angle_refined_deg 1.962 r_angle_other_deg 1.676 r_mcbond_it 1.396 r_bond_other_d 0.722 r_symmetry_vdw_other 0.326 r_xyhbond_nbd_refined 0.307 r_symmetry_hbond_refined 0.298 r_nbd_refined 0.287 r_nbd_other 0.272 r_symmetry_vdw_refined 0.206 r_chiral_restr 0.141 r_gen_planes_other 0.099 r_nbtor_other 0.089 r_gen_planes_refined 0.05 r_bond_refined_d 0.02 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4692 Nucleic Acid Atoms Solvent Atoms 1077 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing