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The structure of the Bem1p PX domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 0.2 M NACL, 0.1 M NA/K PHOSPHATE PH 6.2, 10% PEG 8000 AND 2 MM DTT
Crystal Properties Matthews coefficient Solvent content 2.5 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.015 α = 90 b = 71.621 β = 90 c = 75.316 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 51.9 99.6 0.07 8.89 3.5 164846
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 99.4 0.38 1.5 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.5 51.99 50498 2706 99.4 0.224 0.222 0.2171 0.256 0.2484 RANDOM 20.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.46 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.586 r_dihedral_angle_4_deg 13.66 r_dihedral_angle_3_deg 12.403 r_dihedral_angle_1_deg 4.922 r_scangle_it 3.15 r_scbond_it 2.329 r_mcangle_it 1.485 r_angle_refined_deg 1.188 r_mcbond_it 0.94 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.586 r_dihedral_angle_4_deg 13.66 r_dihedral_angle_3_deg 12.403 r_dihedral_angle_1_deg 4.922 r_scangle_it 3.15 r_scbond_it 2.329 r_mcangle_it 1.485 r_angle_refined_deg 1.188 r_mcbond_it 0.94 r_nbtor_refined 0.307 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.143 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2173 Nucleic Acid Atoms Solvent Atoms 439 Heterogen Atoms 8
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing SHARP phasing REFMAC refinement