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Structure of Schistosoma mansoni Thioredoxin-Glutathione Reductase (SmTGR)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H6V PDB ENTRY 1H6V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 22% PEG 3350, 0.1M HEPES PH 7.2, 0.2M NANO3, 5MM DTT
Crystal Properties Matthews coefficient Solvent content 3.3 62.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.324 α = 90 b = 102.533 β = 112.63 c = 59.027 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 97.1 0.12 9.3 3.2 39579 2 27.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 95.4 0.34 5.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1H6V 2.2 19.92 36440 1916 97.1 0.191 0.188 0.2502 0.252 0.2715 RANDOM 25.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.14 0.2 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.709 r_dihedral_angle_4_deg 17.648 r_dihedral_angle_1_deg 14.987 r_dihedral_angle_3_deg 14.607 r_scangle_it 4.073 r_scbond_it 2.977 r_angle_refined_deg 2.054 r_mcangle_it 1.813 r_mcbond_it 1.238 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.709 r_dihedral_angle_4_deg 17.648 r_dihedral_angle_1_deg 14.987 r_dihedral_angle_3_deg 14.607 r_scangle_it 4.073 r_scbond_it 2.977 r_angle_refined_deg 2.054 r_mcangle_it 1.813 r_mcbond_it 1.238 r_nbtor_refined 0.309 r_xyhbond_nbd_refined 0.264 r_nbd_refined 0.231 r_symmetry_vdw_refined 0.2 r_chiral_restr 0.173 r_symmetry_hbond_refined 0.117 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4492 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 109
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing