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Crystal Structure of the coiled-coil domain of Ndel1 (a.a. 58 to 169) C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 4% PEG 8000, 50 MM SODIUM PHOSPHATE PH 6.8, 100 MM NACL. PROTEIN CONCENTRATION 20 MG/ML. CRYOBUFFER = RESERVOIR PLUS 17% PEG 400.
Crystal Properties Matthews coefficient Solvent content 2.11 41.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.431 α = 90 b = 73.221 β = 105.4 c = 69.026 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 49.3 99.8 0.08 5 11.5 300363 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 100 0.31 2.2 12
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.1 18 24984 1074 99.9 0.236 0.233 0.2323 0.31 0.3083 RANDOM 30.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.52 -2.25 2.86 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.386 r_dihedral_angle_3_deg 19.631 r_dihedral_angle_4_deg 19.627 r_dihedral_angle_1_deg 5.731 r_scangle_it 5.335 r_scbond_it 3.486 r_angle_refined_deg 1.922 r_mcangle_it 1.836 r_mcbond_it 1.279 r_symmetry_vdw_refined 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.386 r_dihedral_angle_3_deg 19.631 r_dihedral_angle_4_deg 19.627 r_dihedral_angle_1_deg 5.731 r_scangle_it 5.335 r_scbond_it 3.486 r_angle_refined_deg 1.922 r_mcangle_it 1.836 r_mcbond_it 1.279 r_symmetry_vdw_refined 0.34 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.276 r_nbd_refined 0.248 r_xyhbond_nbd_refined 0.24 r_chiral_restr 0.135 r_bond_refined_d 0.026 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3700 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing