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The Crystal crystal structure of the estA protein, a virulence factor estA protein from Streptococcus pneumonia
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 10% (V/V) PEG 6000,8% (V/V) ETHYLENE GLYCOL,4% (V/V) 2-METHYL-2,4-PENTANEDIOL,10 MM CYSTEINE,0.1 M TRIS-HCL PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.12 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.695 α = 90 b = 72.128 β = 94.31 c = 101.827 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 40 99.9 0.08 15.7 3.8 113097
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 99.1 0.45 2.4 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 30 107413 5662 99.7 0.184 0.183 0.1786 0.213 0.2082 RANDOM 20.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 0.55 -0.42 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.784 r_dihedral_angle_4_deg 20.207 r_dihedral_angle_3_deg 14.103 r_dihedral_angle_1_deg 6.113 r_scangle_it 2.896 r_scbond_it 2.083 r_angle_refined_deg 1.307 r_mcangle_it 1.111 r_mcbond_it 1.11 r_nbtor_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.784 r_dihedral_angle_4_deg 20.207 r_dihedral_angle_3_deg 14.103 r_dihedral_angle_1_deg 6.113 r_scangle_it 2.896 r_scbond_it 2.083 r_angle_refined_deg 1.307 r_mcangle_it 1.111 r_mcbond_it 1.11 r_nbtor_refined 0.328 r_nbd_refined 0.318 r_symmetry_vdw_refined 0.167 r_symmetry_hbond_refined 0.161 r_xyhbond_nbd_refined 0.104 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8108 Nucleic Acid Atoms Solvent Atoms 563 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing