2UVD

The crystal structure of a 3-oxoacyl-(acyl carrier protein) reductase from Bacillus anthracis (BA3989)


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1Q7CPDB ENTRY 1Q7C

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17HAMPTON INDEX CONDITION 88: POLYETHYLENE GLYCOL 3350 20 % (W/V) AND 0.2 M TRI-AMMONIUM CITRATE PH 7.0
Crystal Properties
Matthews coefficientSolvent content
2.5452

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.62α = 90
b = 120.65β = 104.42
c = 136.38γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2004-02-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.1SRSPX14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.43094.30.1593.182223
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4664.50.551.61.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1Q7C2.427.77771994130940.1820.180.225RANDOM47.94
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.92.07-1.521.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.313
r_dihedral_angle_4_deg21.148
r_dihedral_angle_3_deg18.975
r_scangle_it12.132
r_scbond_it8.884
r_dihedral_angle_1_deg6.402
r_mcangle_it5.227
r_mcbond_it4.725
r_angle_other_deg1.358
r_angle_refined_deg1.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.313
r_dihedral_angle_4_deg21.148
r_dihedral_angle_3_deg18.975
r_scangle_it12.132
r_scbond_it8.884
r_dihedral_angle_1_deg6.402
r_mcangle_it5.227
r_mcbond_it4.725
r_angle_other_deg1.358
r_angle_refined_deg1.34
r_symmetry_vdw_other0.426
r_symmetry_vdw_refined0.407
r_symmetry_hbond_refined0.382
r_nbd_refined0.207
r_nbd_other0.203
r_nbtor_refined0.167
r_xyhbond_nbd_refined0.164
r_chiral_restr0.096
r_nbtor_other0.089
r_bond_refined_d0.013
r_bond_other_d0.005
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14624
Nucleic Acid Atoms
Solvent Atoms575
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing