2RUG
Refined solution structure of the first RNA recognition motif domain in CPEB3
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D 1H-15N NOESY | 1.06 mM [U-100% 13C; U-100% 15N] entity-1 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| 2 | 3D 1H-13C NOESY | 1.06 mM [U-100% 13C; U-100% 15N] entity-1 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| 3 | 2D 1H-15N HSQC | 1.06 mM [U-100% 13C; U-100% 15N] entity-1 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| 4 | 2D 1H-13C HSQC | 1.06 mM [U-100% 13C; U-100% 15N] entity-1 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | XwinNMR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | XwinNMR | 3.5 | Bruker Biospin |
| 2 | processing | NMRPipe | 20030801 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 3 | data analysis | NMRView | 5.0.4 | Johnson, One Moon Scientific |
| 4 | data analysis | KUJIRA | 0.9843 | Kobayashi, N |
| 5 | structure solution | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
| 6 | refinement | Amber | 9 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman |
