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Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65 (ICT2)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 0.96 mM [U-13C; U-15N] entity-1, 20 mM [U-2H] TRIS-2, 100 mM sodium chloride-3, 1 mM [U-2H] DTT-4, 0.02 % sodium azide-5, 10 % [U-2H] D2O-6, 90 % H2O-7 90% H2O/10% D2O 120 7.0 1 atm 296 2 3D 1H-15N NOESY 0.96 mM [U-13C; U-15N] entity-1, 20 mM [U-2H] TRIS-2, 100 mM sodium chloride-3, 1 mM [U-2H] DTT-4, 0.02 % sodium azide-5, 10 % [U-2H] D2O-6, 90 % H2O-7 90% H2O/10% D2O 120 7.0 1 atm 296
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900
NMR Refinement Method Details Software molecular dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis NMRView Johnson, One Moon Scientific 4 data analysis KUJIRA Kobayashi, N. 5 chemical shift assignment KUJIRA Kobayashi, N. 6 structure solution CYANA 2.0 Guntert, Mumenthaler and Wuthrich 7 refinement OPAL Luginbuhl, Guntert, Billeter and Wuthrich