2RSM
Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65 (ICT2)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 0.96 mM [U-13C; U-15N] entity-1, 20 mM [U-2H] TRIS-2, 100 mM sodium chloride-3, 1 mM [U-2H] DTT-4, 0.02 % sodium azide-5, 10 % [U-2H] D2O-6, 90 % H2O-7 | 90% H2O/10% D2O | 120 | 7.0 | 1 atm | 296 | |
2 | 3D 1H-15N NOESY | 0.96 mM [U-13C; U-15N] entity-1, 20 mM [U-2H] TRIS-2, 100 mM sodium chloride-3, 1 mM [U-2H] DTT-4, 0.02 % sodium azide-5, 10 % [U-2H] D2O-6, 90 % H2O-7 | 90% H2O/10% D2O | 120 | 7.0 | 1 atm | 296 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | NMRView | Johnson, One Moon Scientific | |
4 | data analysis | KUJIRA | Kobayashi, N. | |
5 | chemical shift assignment | KUJIRA | Kobayashi, N. | |
6 | structure solution | CYANA | 2.0 | Guntert, Mumenthaler and Wuthrich |
7 | refinement | OPAL | Luginbuhl, Guntert, Billeter and Wuthrich |