2RRN
Solution structure of SecDF periplasmic domain P4
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1mM [U-13C; U-15N] P4 domain; 20mM TRIS; 50mM sodium chloride; 90% H2O/10% D2O | 90% H2O/10% D2O | 50 | 6.5 | ambient | 303 | |
2 | 3D 1H-13C NOESY | 1mM [U-13C; U-15N] P4 domain; 20mM TRIS; 50mM sodium chloride; 90% H2O/10% D2O | 90% H2O/10% D2O | 50 | 6.5 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
Energy Minimization | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
5 | structure solution | ProcheckNMR | Laskowski and MacArthur | |
6 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |