2RQC
Solution Structure of RNA-binding domain 3 of CUGBP1 in complex with RNA (UG)3
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 0.800 mM [U-100% 13C; U-100% 15N] CUG-BP- AND ETR-3-LIKE FACTOR 1-1, 0.800 mM RNA (5'-R(*UP*GP*UP*GP*UP*G)-3')-2 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 288 | |
2 | 3D 1H-15N NOESY | 0.800 mM [U-100% 13C; U-100% 15N] CUG-BP- AND ETR-3-LIKE FACTOR 1-1, 0.800 mM RNA (5'-R(*UP*GP*UP*GP*UP*G)-3')-2 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 288 | |
3 | 2D 1H-1H NOESY | 0.800 mM [U-100% 13C; U-100% 15N] CUG-BP- AND ETR-3-LIKE FACTOR 1-1, 0.800 mM RNA (5'-R(*UP*GP*UP*GP*UP*G)-3')-2 | 90% H2O/10% D2O | 100 | 7.0 | AMBIENT | 288 | |
4 | 3D 1H-13C NOESY | 0.800 mM [U-100% 13C; U-100% 15N] CUG-BP- AND ETR-3-LIKE FACTOR 1-3, 0.800 mM RNA (5'-R(*UP*GP*UP*GP*UP*G)-3')-4 | 100% D2O | 100 | 7.0 | AMBIENT | 288 | |
5 | 2D 1H-1H NOESY | 0.800 mM [U-100% 13C; U-100% 15N] CUG-BP- AND ETR-3-LIKE FACTOR 1-3, 0.800 mM RNA (5'-R(*UP*GP*UP*GP*UP*G)-3')-4 | 100% D2O | 100 | 7.0 | AMBIENT | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
DGSA-distance geometry simulated annealing, RESTRAINTED MOLECULAR DYNAMICS, SIMULATED ANNEALING, ENERGY MINIMIZATION | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 9 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |
2 | collection | XwinNMR | 3.5 | Bruker Biospin |
3 | processing | NMRPipe | 20060702 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
4 | data analysis | NMRView | 5.0.4 | Johnson, One Moon Scientific |
5 | data analysis | KUJIRA | 0.9825 | Kobayashi. N |
6 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |