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Solution structure of the AT-rich interaction domain (ARID) of Jumonji/JARID2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.25-1.6 mM [U-15N] Jmj-ARID(615-730)-1 90% H2O/10% D2O 90 6.4 ambient 288 2 2D 1H-15N HSQC 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 3 3D 1H-15N NOESY 0.25-1.6 mM [U-15N] Jmj-ARID(615-730)-1 90% H2O/10% D2O 90 6.4 ambient 288 4 3D HNHA 0.25-1.6 mM [U-15N] Jmj-ARID(615-730)-1 90% H2O/10% D2O 90 6.4 ambient 288 5 3D HNHB 0.25-1.6 mM [U-15N] Jmj-ARID(615-730)-1 90% H2O/10% D2O 90 6.4 ambient 288 6 2D 1H-13C HSQC 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 7 2D 1H-13C HSQC 0.25-1.6 mM [U-10% 13C; U-15N] Jmj-ARID(615-730)-4 90% H2O/10% D2O 90 6.4 ambient 288 8 3D HNCO 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 9 3D HCACO 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 10 3D HN(CO)CA 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 11 3D HNCA 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 12 3D CBCA(CO)NH 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 13 3D HNCACB 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 14 3D C(CO)NH 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 15 3D H(CCO)NH 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 16 3D HBHA(CO)NH 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 17 3D HCCH-TOCSY 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 18 3D HCCH-TOCSY 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-3 100% D2O 90 6.4 ambient 288 19 3D 1H-13C NOESY 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 20 3D 1H-13C NOESY 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-3 100% D2O 90 6.4 ambient 288 21 2D HBCBCGCDHD 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288 22 2D HBCBCGCDCEHE 0.25-1.6 mM [U-13C; U-15N] Jmj-ARID(615-730)-2 90% H2O/10% D2O 90 6.4 ambient 288
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE II 700
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS 1.1 Brunger, Adams, Clore, Gros, Nilges and Read 2 collection CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 processing TopSpin Bruker Biospin 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 data analysis Sparky Goddard 6 data analysis PIPP Garrett