☰ Navigation Tabs
The solution structure of the p63 DNA-binding domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNHA 0.7mM [U-15N] p63BDB; 50mM potassium chloride; 50mM potassium phosphate; 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100 6.8 ambient 303 2 3D HNHB 0.7mM [U-15N] p63BDB; 50mM potassium chloride; 50mM potassium phosphate; 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100 6.8 ambient 303 3 3D 1H-15N NOESY 0.7mM [U-15N] p63BDB; 50mM potassium chloride; 50mM potassium phosphate; 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100 6.8 ambient 303 4 3D 1H-13C NOESY 0.7mM [U-13C; U-15N] p63BDB; 50mM potassium chloride; 50mM potassium phosphate; 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100 6.8 ambient 303 5 3D CNH NOESY 0.7mM [U-13C; U-15N] p63BDB; 50mM potassium chloride; 50mM potassium phosphate; 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100 6.8 ambient 303 6 3D 1H-15N NOESY 0.7mM [U-13C; U-15N] p63BDB; 50mM potassium chloride; 50mM potassium phosphate; 5mM DTT; 95% H2O, 5% D2O 95% H2O/5% D2O 100 6.8 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE 900 3 Bruker DMX 600
NMR Refinement Method Details Software simulated annealing Sparky
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 200 Conformers Submitted Total Number 21 Representative Model 1 (minimized average structure)
Additional NMR Experimental Information Details CNH-NOESY means 13C-HSQC-NOE-15N-HSQC
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Sparky 3.110 Goddard 2 data analysis Sparky 3.110 Goddard 3 peak picking Sparky 3.110 Goddard 4 structure solution X-PLOR NIH 2.16.0 Schwieters, Kuszewski, Tjandra and Clore 5 refinement X-PLOR NIH 2.16.0 Schwieters, Kuszewski, Tjandra and Clore 6 geometry optimization TALOS Cornilescu, Delaglio and Bax 7 collection XwinNMR Bruker Biospin 8 processing XwinNMR Bruker Biospin