2RLU
The Three Dimensional Structure of the Moorella thermoacetica Selenocysteine Insertion Sequence RNA Hairpin and its Interaction with the Elongation factor SelB
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 3-5mg SECIS-MT RNA | 90% H2O/10% D2O | 278 | ||||
2 | 2D 1H-1H NOESY | 3-5mg SECIS-MT RNA | 90% H2O/10% D2O | 298 | ||||
3 | 2D 1H-1H TOCSY | 3-5mg SECIS-MT RNA | 100% D2O | 298 | ||||
4 | 2D 1H-13C HSQC | 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA | 100% D2O | 298 | ||||
5 | 2D 1H-15N HSQC | 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA | 90% H2O/10% D2O | 278 | ||||
6 | 3D 1H-13C NOESY | 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA | 100% D2O | 298 | ||||
7 | 3D 1H-15N NOESY | 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA | 90% H2O/10% D2O | 278 | ||||
8 | 3D HCCH-TOCSY | 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA | 100% D2O | 298 | ||||
9 | 3D HCCH-COSY | 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA | 100% D2O | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the noe lowest energy |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
5 | data analysis | NMRView | Johnson, One Moon Scientific | |
6 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |