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The Three Dimensional Structure of the Moorella thermoacetica Selenocysteine Insertion Sequence RNA Hairpin and its Interaction with the Elongation factor SelB
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 3-5mg SECIS-MT RNA 90% H2O/10% D2O 278 2 2D 1H-1H NOESY 3-5mg SECIS-MT RNA 90% H2O/10% D2O 298 3 2D 1H-1H TOCSY 3-5mg SECIS-MT RNA 100% D2O 298 4 2D 1H-13C HSQC 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA 100% D2O 298 5 2D 1H-15N HSQC 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA 90% H2O/10% D2O 278 6 3D 1H-13C NOESY 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA 100% D2O 298 7 3D 1H-15N NOESY 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA 90% H2O/10% D2O 278 8 3D HCCH-TOCSY 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA 100% D2O 298 9 3D HCCH-COSY 3-5mg [U-100% 13C; U-100% 15N] SECIS-MT RNA 100% D2O 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing, molecular dynamics XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the noe lowest energy Conformers Calculated Total Number 30 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking NMRView Johnson, One Moon Scientific 5 data analysis NMRView Johnson, One Moon Scientific 6 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 7 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore