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CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM S23 RIBOSOMAL PROTEIN FAMILY (BT_0352) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.70 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.1 277 NANODROP, 0.2M CaCl2, 20.0% PEG 3350, no Buffer pH 5.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.13 42.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.238 α = 90 b = 83.823 β = 97.42 c = 63.923 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9798, 0.9537, 0.9796 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.643 96.2 0.053 0.053 9.1 2 63158 20.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 88.2 0.441 0.441 1.7 1.8 4288
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.643 63130 3216 95.92 0.165 0.163 0.1726 0.201 0.2111 RANDOM 17.012
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 0.19 -0.29 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.276 r_dihedral_angle_3_deg 12.39 r_dihedral_angle_4_deg 11.604 r_scangle_it 6.586 r_scbond_it 4.41 r_dihedral_angle_1_deg 4.356 r_mcangle_it 2.204 r_mcbond_it 1.661 r_angle_refined_deg 1.196 r_angle_other_deg 0.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.276 r_dihedral_angle_3_deg 12.39 r_dihedral_angle_4_deg 11.604 r_scangle_it 6.586 r_scbond_it 4.41 r_dihedral_angle_1_deg 4.356 r_mcangle_it 2.204 r_mcbond_it 1.661 r_angle_refined_deg 1.196 r_angle_other_deg 0.899 r_mcbond_other 0.614 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.217 r_xyhbond_nbd_refined 0.197 r_nbtor_refined 0.183 r_nbd_other 0.178 r_symmetry_vdw_other 0.148 r_nbtor_other 0.084 r_chiral_restr 0.075 r_metal_ion_refined 0.071 r_symmetry_metal_ion_refined 0.049 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4478 Nucleic Acid Atoms Solvent Atoms 518 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SHELXD phasing SOLVE phasing