☰ Navigation Tabs
Crystal structure of the fourth and fifth fibronectin F1 modules in complex with a fragment of staphylococcus aureus fnbpa-5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Previous low resolution structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 291 0.2M NACL, 0.1M BIS TRIS, 14% PEG3350, pH6.2, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.9 57.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.58 α = 90 b = 85.58 β = 90 c = 230.86 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Toroidal mirror 2006-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.93300 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.161 99.1 0.059 0.059 22.5 7.3 58479 58383 3.7 29.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 97.5 0.3 0.3 3.8 5.1 8238
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Previous low resolution structure 2 28.16 58383 55429 2954 99.07 0.221 0.221 0.218 0.2165 0.266 0.2655 RANDOM 36.859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.78 1.78 -3.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.969 r_dihedral_angle_4_deg 17.853 r_dihedral_angle_3_deg 15.436 r_dihedral_angle_1_deg 6.853 r_scangle_it 4.381 r_scbond_it 2.679 r_mcangle_it 1.847 r_angle_refined_deg 1.552 r_mcbond_it 1.048 r_symmetry_vdw_refined 0.401
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.969 r_dihedral_angle_4_deg 17.853 r_dihedral_angle_3_deg 15.436 r_dihedral_angle_1_deg 6.853 r_scangle_it 4.381 r_scbond_it 2.679 r_mcangle_it 1.847 r_angle_refined_deg 1.552 r_mcbond_it 1.048 r_symmetry_vdw_refined 0.401 r_nbtor_refined 0.307 r_nbd_refined 0.276 r_symmetry_hbond_refined 0.253 r_xyhbond_nbd_refined 0.174 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_chiral_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4876 Nucleic Acid Atoms Solvent Atoms 462 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction MOLREP phasing