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Crystal Structure of F. graminearum TRI101 complexed with Coenzyme A and T-2 mycotoxin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZBA PDB entry 2zba
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 277 2.1M sodium malonate, 100 mM 3-N-morpholino propanesulfonic acid, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.11 60.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.113 α = 90 b = 123.113 β = 90 c = 81.27 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97907 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 86.4 0.063 20.2 5.8 78126 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 46.7 0.503 1.2 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2zba 1.6 33.9 67669 3596 86.42 0.18537 0.18412 0.183 0.20896 0.208 RANDOM 16.061
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.1 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.925 r_dihedral_angle_4_deg 15.578 r_dihedral_angle_3_deg 12.23 r_dihedral_angle_1_deg 5.314 r_scangle_it 2.095 r_scbond_it 1.327 r_angle_refined_deg 1.201 r_mcangle_it 0.864 r_mcbond_it 0.515 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.925 r_dihedral_angle_4_deg 15.578 r_dihedral_angle_3_deg 12.23 r_dihedral_angle_1_deg 5.314 r_scangle_it 2.095 r_scbond_it 1.327 r_angle_refined_deg 1.201 r_mcangle_it 0.864 r_mcbond_it 0.515 r_nbtor_refined 0.304 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.184 r_xyhbond_nbd_refined 0.114 r_symmetry_hbond_refined 0.101 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3385 Nucleic Acid Atoms Solvent Atoms 556 Heterogen Atoms 91
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing