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X-ray structure of the self-defense and signaling protein DIR1 from Arabidopsis taliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 0.08M acetate buffer pH 6.0, 0.02M ZnSO4, 22% PEG 600 MME, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.33 47.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.655 α = 90 b = 48.217 β = 90 c = 54.406 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2006-04-04 M MAD 2 1 x-ray 100 CCD ADSC QUANTUM 210 Mirrors 2006-11-17 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.28230, 1.28310, 1.2770 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9330 ESRF ID14-1
Data Collection Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.82 1.92 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 9.92 10412 10335 496 99.51 0.192 0.192 0.189 0.1941 0.252 0.2584 RANDOM 38.162
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.03 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 49.507 r_dihedral_angle_3_deg 15.808 r_scangle_it 4.768 r_dihedral_angle_1_deg 4.667 r_scbond_it 3.109 r_mcangle_it 2.266 r_angle_refined_deg 2.229 r_mcbond_it 1.567 r_nbtor_refined 0.328 r_symmetry_hbond_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 49.507 r_dihedral_angle_3_deg 15.808 r_scangle_it 4.768 r_dihedral_angle_1_deg 4.667 r_scbond_it 3.109 r_mcangle_it 2.266 r_angle_refined_deg 2.229 r_mcbond_it 1.567 r_nbtor_refined 0.328 r_symmetry_hbond_refined 0.313 r_nbd_refined 0.288 r_symmetry_vdw_refined 0.284 r_xyhbond_nbd_refined 0.224 r_symmetry_metal_ion_refined 0.215 r_chiral_restr 0.129 r_metal_ion_refined 0.08 r_bond_refined_d 0.02 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 557 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 63
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction MxCuBE data collection