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B-specific-1,3-galactosyltransferase (GTB)+H-antigen acceptor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 7.5 298 PEG4000 Glycerol MgCl NH2SO4, pH 7.5, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.29 46.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.56 α = 90 b = 150.25 β = 90 c = 79.38 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IV++ 2007-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 19.87 98.2 0.037 17.4 4.91 45171
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 96 0.318 3.7 4.07 4342
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 19.85 45166 2284 98.21 0.213 0.211 0.2041 0.235 0.2284 RANDOM 21.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.553 r_dihedral_angle_4_deg 20.043 r_dihedral_angle_3_deg 12.968 r_dihedral_angle_1_deg 6.003 r_scangle_it 3.026 r_scbond_it 2.016 r_mcangle_it 1.313 r_angle_refined_deg 1.282 r_mcbond_it 0.871 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.553 r_dihedral_angle_4_deg 20.043 r_dihedral_angle_3_deg 12.968 r_dihedral_angle_1_deg 6.003 r_scangle_it 3.026 r_scbond_it 2.016 r_mcangle_it 1.313 r_angle_refined_deg 1.282 r_mcbond_it 0.871 r_nbtor_refined 0.312 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.204 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.141 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2254 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms 28
Software Software Software Name Purpose d*TREK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction