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B-specific-1,3-galactosyltransferase)(GTB) + UDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 7.5 298 PEG4000 Glycerol MgCl NH2SO4, pH 7.5, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.28 45.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.54 α = 90 b = 149.93 β = 90 c = 79.28 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IV++ 2006-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 19.83 98.5 0.051 16.7 6.59 31525
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 96.2 0.338 3.9 5.86 3051
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 19.83 31524 1586 98.46 0.198 0.196 0.1923 0.231 0.228 RANDOM 22.216
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.64 r_dihedral_angle_4_deg 15.726 r_dihedral_angle_3_deg 13.48 r_dihedral_angle_1_deg 6.224 r_scangle_it 3.436 r_scbond_it 2.264 r_angle_refined_deg 1.441 r_mcangle_it 1.44 r_mcbond_it 0.995 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.64 r_dihedral_angle_4_deg 15.726 r_dihedral_angle_3_deg 13.48 r_dihedral_angle_1_deg 6.224 r_scangle_it 3.436 r_scbond_it 2.264 r_angle_refined_deg 1.441 r_mcangle_it 1.44 r_mcbond_it 0.995 r_nbtor_refined 0.308 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.191 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.102 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2257 Nucleic Acid Atoms Solvent Atoms 213 Heterogen Atoms 32
Software Software Software Name Purpose d*TREK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction