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Crystal structure of Rtt109
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 PEG550 MME, Ammonium citrate, glycerol, Tris, pH8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.68 54.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.401 α = 90 b = 69.233 β = 94.93 c = 55.661 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 0.9792 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 50 0.989 0.098 3.7 29160 30288 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 0.971 0.541 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 46.2 2 30288 1619 94.51 0.21864 0.21641 0.2269 0.25907 0.2663 RANDOM 48.504
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.8 -2.53 -2.38 -1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.635 r_dihedral_angle_4_deg 17.908 r_dihedral_angle_3_deg 16.236 r_dihedral_angle_1_deg 6.083 r_scangle_it 2.861 r_scbond_it 1.892 r_mcangle_it 1.419 r_angle_refined_deg 1.388 r_mcbond_it 0.955 r_symmetry_hbond_refined 0.476
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.635 r_dihedral_angle_4_deg 17.908 r_dihedral_angle_3_deg 16.236 r_dihedral_angle_1_deg 6.083 r_scangle_it 2.861 r_scbond_it 1.892 r_mcangle_it 1.419 r_angle_refined_deg 1.388 r_mcbond_it 0.955 r_symmetry_hbond_refined 0.476 r_nbtor_refined 0.307 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.164 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.092 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3039 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing