☰ Navigation Tabs
CBS domain protein PAE2072 from Pyrobaculum aerophilum complexed with AMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop vapor diffusion 7.8 298 PEG3350, Lithium Acetate, Cesium Chloride, pH 7.8, hanging drop vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.13 42.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.726 α = 90 b = 55.726 β = 90 c = 336.351 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 20 93.7 0.064 13.3 2.6 21965 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 99.6 0.373 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 18.91 20756 1118 93.8 0.24218 0.23935 0.237 0.29422 0.2898 RANDOM 48.738
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.23 r_dihedral_angle_4_deg 18.341 r_dihedral_angle_3_deg 13.26 r_dihedral_angle_1_deg 4.273 r_mcangle_it 1.89 r_scangle_it 1.825 r_angle_refined_deg 1.137 r_mcbond_it 1.125 r_scbond_it 1.111 r_angle_other_deg 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.23 r_dihedral_angle_4_deg 18.341 r_dihedral_angle_3_deg 13.26 r_dihedral_angle_1_deg 4.273 r_mcangle_it 1.89 r_scangle_it 1.825 r_angle_refined_deg 1.137 r_mcbond_it 1.125 r_scbond_it 1.111 r_angle_other_deg 0.826 r_symmetry_vdw_refined 0.591 r_symmetry_vdw_other 0.344 r_symmetry_hbond_refined 0.213 r_mcbond_other 0.202 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.047 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3984 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 195
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction