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Crystal structure of a putative kinase (caur_3907) from chloroflexus aurantiacus j-10-fl at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 0.2M MgCl2, 10.0% PEG 3000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K 2 VAPOR DIFFUSION, SITTING DROP 277 NANODROP, 20.0% Glycerol, 0.04M KH2PO4, 16.0% PEG 8000, no buffer, no pH, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.93 α = 90 b = 76.79 β = 90 c = 129.11 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2007-08-19 M MAD 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.99187 APS 23-ID-D 2 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97957, 0.95373 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.761 90.8 0.0667 13.1 5.17 73034 -3 33.512
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 92.7 0.6278 2.48 4.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.761 72956 3714 90.75 0.183 0.181 0.1888 0.221 0.2296 RANDOM 28.243
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 -0.68 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.9 r_dihedral_angle_4_deg 16.17 r_dihedral_angle_3_deg 12.403 r_scangle_it 5.441 r_scbond_it 3.826 r_dihedral_angle_1_deg 3.671 r_mcangle_it 2.199 r_mcbond_it 1.5 r_angle_refined_deg 1.238 r_angle_other_deg 0.751
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.9 r_dihedral_angle_4_deg 16.17 r_dihedral_angle_3_deg 12.403 r_scangle_it 5.441 r_scbond_it 3.826 r_dihedral_angle_1_deg 3.671 r_mcangle_it 2.199 r_mcbond_it 1.5 r_angle_refined_deg 1.238 r_angle_other_deg 0.751 r_mcbond_other 0.335 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.207 r_symmetry_vdw_other 0.191 r_xyhbond_nbd_refined 0.186 r_nbtor_refined 0.174 r_nbd_other 0.17 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_other 0.126 r_nbtor_other 0.084 r_chiral_restr 0.067 r_bond_refined_d 0.017 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5571 Nucleic Acid Atoms Solvent Atoms 611 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHARP phasing