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D. radiodurans RecQ HRDC domain 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 273 1.8 M Na-K Phosphate pH 4.0, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 3.08 60.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.978 α = 90 b = 49.978 β = 90 c = 83.61 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-10-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.9999, 0.9797 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 83.6 96.6 0.067 42318 40879
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.16 78.7 0.419 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.1 20 42294 38922 2061 96.93 0.17798 0.17715 0.179 0.19399 0.1962 RANDOM 17.709
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.28 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.873 r_dihedral_angle_4_deg 16.587 r_dihedral_angle_3_deg 12.732 r_dihedral_angle_1_deg 5.427 r_sphericity_bonded 3.801 r_sphericity_free 3.619 r_scangle_it 3.406 r_scbond_it 2.444 r_mcangle_it 1.774 r_rigid_bond_restr 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.873 r_dihedral_angle_4_deg 16.587 r_dihedral_angle_3_deg 12.732 r_dihedral_angle_1_deg 5.427 r_sphericity_bonded 3.801 r_sphericity_free 3.619 r_scangle_it 3.406 r_scbond_it 2.444 r_mcangle_it 1.774 r_rigid_bond_restr 1.42 r_mcbond_it 1.253 r_angle_refined_deg 1.226 r_symmetry_vdw_refined 0.388 r_nbtor_refined 0.306 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.111 r_chiral_restr 0.095 r_symmetry_hbond_refined 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 588 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling DM phasing