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FC-fragment of monoclonal antibody IGG2B from Mus musculus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IGT FC-FRAGMENT OF PDB ENTRY 1IGT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 301 20% PEG2000, 0.1 M HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 301K
Crystal Properties Matthews coefficient Solvent content 3.19 61.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.946 α = 90 b = 63.956 β = 103.83 c = 72.624 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9168 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 97.9 0.113 0.113 10.3 3.3 34014 34014 25.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 100 0.449 0.449 2.91 3.3 2820
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT thoughout FC-FRAGMENT OF PDB ENTRY 1IGT 2.13 20 34014 34014 1670 97.9 0.20148 0.20148 0.2006 0.1994 0.213 0.2112 RANDOM 25.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.21 0.26 -0.27 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.877 r_dihedral_angle_4_deg 19.594 r_dihedral_angle_3_deg 16.943 r_dihedral_angle_1_deg 6.112 r_scangle_it 3.168 r_scbond_it 2.063 r_angle_refined_deg 1.555 r_mcangle_it 1.511 r_mcbond_it 0.92 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.877 r_dihedral_angle_4_deg 19.594 r_dihedral_angle_3_deg 16.943 r_dihedral_angle_1_deg 6.112 r_scangle_it 3.168 r_scbond_it 2.063 r_angle_refined_deg 1.555 r_mcangle_it 1.511 r_mcbond_it 0.92 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.263 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.167 r_chiral_restr 0.101 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3293 Nucleic Acid Atoms Solvent Atoms 533 Heterogen Atoms 220
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling