☰ Navigation Tabs
Crystal structure of tetR-family transcriptional regulator
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 297 0.1M Na(OAC) pH 4.6, 2.0M Na formate, 4% Isopropanol, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.08 40.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.484 α = 90 b = 70.459 β = 90 c = 72.102 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV VariMax Cr 2006-07-07 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV VariMax HR 2006-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 2.29 2 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.86 50.38 99.9 0.052 0.052 12 7.1 30058 30058 34.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.86 1.89 100 0.517 0.517 3.11 6.9 1467
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.86 50.38 29381 29381 626 99.9 0.20396 0.20396 0.2031 0.2029 0.24506 0.2467 RANDOM 36.254
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.26 1.55 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.932 r_dihedral_angle_3_deg 13.738 r_dihedral_angle_4_deg 11.053 r_dihedral_angle_1_deg 4.348 r_scangle_it 3.901 r_scbond_it 2.425 r_mcangle_it 1.478 r_angle_refined_deg 1.185 r_mcbond_it 0.875 r_nbtor_refined 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.932 r_dihedral_angle_3_deg 13.738 r_dihedral_angle_4_deg 11.053 r_dihedral_angle_1_deg 4.348 r_scangle_it 3.901 r_scbond_it 2.425 r_mcangle_it 1.478 r_angle_refined_deg 1.185 r_mcbond_it 0.875 r_nbtor_refined 0.291 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.177 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2470 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing RESOLVE phasing ARP/wARP model building