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Carboxysome Shell protein, OrfA from H. Neapolitanus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QW7 CRYSTAL STRUCTURE OF CCML PDB ID 2QW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 pH 8.0, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.97 37.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.933 α = 90 b = 86.78 β = 90.22 c = 35.214 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 90 99.7 0.175 6.1 7.2 20056 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 99 0.507 6.7 2004
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT CRYSTAL STRUCTURE OF CCML PDB ID 2QW7 2.15 43.4 20042 1022 99.32 0.187 0.184 0.1924 0.243 0.2457 RANDOM 13.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.02 0.03 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.59 r_dihedral_angle_3_deg 15.708 r_dihedral_angle_4_deg 11.479 r_dihedral_angle_1_deg 5.677 r_mcangle_it 1.795 r_scangle_it 1.652 r_mcbond_it 1.282 r_scbond_it 1.168 r_angle_refined_deg 1.001 r_angle_other_deg 0.777
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.59 r_dihedral_angle_3_deg 15.708 r_dihedral_angle_4_deg 11.479 r_dihedral_angle_1_deg 5.677 r_mcangle_it 1.795 r_scangle_it 1.652 r_mcbond_it 1.282 r_scbond_it 1.168 r_angle_refined_deg 1.001 r_angle_other_deg 0.777 r_mcbond_other 0.249 r_symmetry_vdw_other 0.229 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.204 r_nbd_other 0.186 r_nbtor_refined 0.163 r_symmetry_hbond_refined 0.132 r_xyhbond_nbd_refined 0.116 r_nbtor_other 0.082 r_chiral_restr 0.054 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3015 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 19
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction BOS data collection