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Crystal structure of the NR3A ligand binding core complex with D-serine at 1.45 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.3 293 0.12 M NaSCN, 0.1M NaCitrate, 0.01 M EDTA, 11% PEG 3350, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.21 44.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.79 α = 90 b = 97.701 β = 93.6 c = 60.05 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.00000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 35 96 0.05 14.3 3.1 100689 100689 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 72.1 0.292 2.5 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Difference Fourier THROUGHOUT 1.45 34.84 91776 91776 4839 95.87 0.15423 0.15423 0.15297 0.16 0.17781 0.1859 RANDOM 13.952
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.622 r_dihedral_angle_4_deg 17.471 r_dihedral_angle_3_deg 10.737 r_dihedral_angle_1_deg 5.041 r_scangle_it 3.021 r_mcangle_it 2.23 r_scbond_it 2.006 r_angle_refined_deg 1.656 r_mcbond_it 1.524 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.622 r_dihedral_angle_4_deg 17.471 r_dihedral_angle_3_deg 10.737 r_dihedral_angle_1_deg 5.041 r_scangle_it 3.021 r_mcangle_it 2.23 r_scbond_it 2.006 r_angle_refined_deg 1.656 r_mcbond_it 1.524 r_nbtor_refined 0.32 r_nbd_refined 0.251 r_symmetry_hbond_refined 0.246 r_symmetry_vdw_refined 0.235 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.11 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4501 Nucleic Acid Atoms Solvent Atoms 633 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling