X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2O6RPDB ENTRY 2O6R

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72952.0-2.4 M NaH2PO4/K2HPO4, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.6453.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.109α = 90
b = 61.057β = 107.35
c = 98.081γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMarUSA MarMosaic -325Flat Mirror2007-06-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.98SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15091.30.11593.143844
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1881.30.29332.83847

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2O6R2.15041594223291.060.220.2170.264RANDOM20.107
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.91-0.36-1.39-2.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.543
r_dihedral_angle_4_deg23.63
r_dihedral_angle_3_deg13.423
r_dihedral_angle_1_deg6.324
r_scangle_it5.945
r_scbond_it4.526
r_mcangle_it2.272
r_angle_refined_deg1.654
r_mcbond_it1.54
r_angle_other_deg1.068
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.543
r_dihedral_angle_4_deg23.63
r_dihedral_angle_3_deg13.423
r_dihedral_angle_1_deg6.324
r_scangle_it5.945
r_scbond_it4.526
r_mcangle_it2.272
r_angle_refined_deg1.654
r_mcbond_it1.54
r_angle_other_deg1.068
r_mcbond_other0.313
r_symmetry_vdw_other0.309
r_symmetry_vdw_refined0.269
r_nbd_refined0.21
r_nbd_other0.21
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.181
r_symmetry_hbond_refined0.158
r_chiral_restr0.096
r_nbtor_other0.09
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5456
Nucleic Acid Atoms
Solvent Atoms321
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection
MOSFLMdata reduction
HKL-2000data reduction
HKL-2000data scaling
CaspRphasing