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Crystal Structure of KD(P)GA from T.tenax
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 298 HEPES/KOH, pH 7.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.99 69.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.347 α = 90 b = 150.347 β = 90 c = 175.42 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.905 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.17 0.065 0.087 9.9 135342 135046 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 100 0.25 0.392 5.92 10 18158
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 48.17 135044 6753 100 0.186 0.184 0.1833 0.213 0.2094 RANDOM 27.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.26 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.235 r_dihedral_angle_4_deg 19.556 r_dihedral_angle_3_deg 13.875 r_dihedral_angle_1_deg 10.107 r_scangle_it 2.672 r_mcangle_it 2.12 r_scbond_it 1.716 r_angle_refined_deg 1.472 r_mcbond_it 1.43 r_symmetry_hbond_refined 0.831
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.235 r_dihedral_angle_4_deg 19.556 r_dihedral_angle_3_deg 13.875 r_dihedral_angle_1_deg 10.107 r_scangle_it 2.672 r_mcangle_it 2.12 r_scbond_it 1.716 r_angle_refined_deg 1.472 r_mcbond_it 1.43 r_symmetry_hbond_refined 0.831 r_symmetry_vdw_refined 0.333 r_nbtor_refined 0.315 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.209 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8740 Nucleic Acid Atoms Solvent Atoms 690 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction XSCALE data scaling PHASER phasing