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CRYSTAL STRUCTURE OF A putative acetyltransferase of the GNAT family (DDE_3044) FROM DESULFOVIBRIO DESULFURICANS SUBSP. AT 1.85 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 35.0% 2-ethoxyethanol, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.33 47.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.75 α = 90 b = 47.35 β = 97.04 c = 108.12 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97951, 0.97926 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 28.116 96.9 0.03 12.22 30713 -3 34.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 94.9 0.611 1.24 4666
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 28.116 30712 1545 98.92 0.211 0.211 0.209 0.2111 0.246 0.2466 RANDOM 33.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 0.02 2.66 -1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21.755 r_dihedral_angle_4_deg 10.065 r_dihedral_angle_3_deg 9.434 r_scangle_it 6.126 r_scbond_it 4.938 r_mcangle_it 3.202 r_dihedral_angle_1_deg 2.65 r_mcbond_it 2.257 r_angle_refined_deg 1.964 r_angle_other_deg 1.418
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21.755 r_dihedral_angle_4_deg 10.065 r_dihedral_angle_3_deg 9.434 r_scangle_it 6.126 r_scbond_it 4.938 r_mcangle_it 3.202 r_dihedral_angle_1_deg 2.65 r_mcbond_it 2.257 r_angle_refined_deg 1.964 r_angle_other_deg 1.418 r_mcbond_other 0.564 r_symmetry_vdw_other 0.223 r_nbd_refined 0.184 r_nbtor_refined 0.183 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.177 r_nbd_other 0.155 r_symmetry_vdw_refined 0.126 r_chiral_restr 0.118 r_nbtor_other 0.086 r_xyhbond_nbd_other 0.045 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2386 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction