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CRYSTAL STRUCTURE OF a ribokinase-like superfamily protein (EF1790) FROM ENTEROCOCCUS FAECALIS V583 AT 1.80 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 0.2M MgCl2, 10.0% PEG 3000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.9 57.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.817 α = 90 b = 159.564 β = 90 c = 102.497 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-06-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97926, 0.97895 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.591 99.4 0.102 0.102 6.2 5 73792 20.819
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 98.9 0.67 0.67 1.1 5.1 5365
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.591 73782 3709 99.28 0.152 0.152 0.15 0.183 0.1842 RANDOM 18.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.35 -0.98 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.183 r_dihedral_angle_3_deg 12.507 r_dihedral_angle_4_deg 10.392 r_scangle_it 6.791 r_dihedral_angle_1_deg 5.551 r_scbond_it 4.87 r_mcangle_it 3.008 r_mcbond_it 1.974 r_angle_refined_deg 1.459 r_angle_other_deg 0.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.183 r_dihedral_angle_3_deg 12.507 r_dihedral_angle_4_deg 10.392 r_scangle_it 6.791 r_dihedral_angle_1_deg 5.551 r_scbond_it 4.87 r_mcangle_it 3.008 r_mcbond_it 1.974 r_angle_refined_deg 1.459 r_angle_other_deg 0.925 r_mcbond_other 0.617 r_symmetry_vdw_other 0.282 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.202 r_symmetry_hbond_refined 0.188 r_nbd_other 0.184 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.089 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4327 Nucleic Acid Atoms Solvent Atoms 621 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHARP phasing SHELXD phasing