☰ Navigation Tabs
Crystal structure of S25-2 Fab in complex with Kdo analogues
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 300 PEG 4000, ethelyene glycol, pH 8.0, VAPOR DIFFUSION, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.53 51.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.74 α = 90 b = 81.42 β = 90 c = 131.41 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2007-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 19.94 98.8 0.051 11.4 4.19 64881
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 100 0.324 3.1 3.54 6480
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 19.94 64877 3294 98.8 0.23 0.229 0.2218 0.255 0.2499 RANDOM 24.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -0.13 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.11 r_dihedral_angle_4_deg 20.583 r_dihedral_angle_3_deg 13.021 r_dihedral_angle_1_deg 6.285 r_scangle_it 3.17 r_scbond_it 2.23 r_angle_refined_deg 1.461 r_mcangle_it 1.431 r_mcbond_it 0.905 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.11 r_dihedral_angle_4_deg 20.583 r_dihedral_angle_3_deg 13.021 r_dihedral_angle_1_deg 6.285 r_scangle_it 3.17 r_scbond_it 2.23 r_angle_refined_deg 1.461 r_mcangle_it 1.431 r_mcbond_it 0.905 r_nbtor_refined 0.301 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.203 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.101 r_symmetry_hbond_refined 0.099 r_metal_ion_refined 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3345 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 36
Software Software Software Name Purpose d*TREK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection CrystalClear data reduction