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PFA1 FAB complexed with GripI peptide fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 295 PEG, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.05 39.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.467 α = 90 b = 112.243 β = 93.43 c = 43.174 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 2 1 x-ray 100 CCD ADSC QUANTUM 315 2006-08-11 M SINGLE WAVELENGTH 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV 2006-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54178 2 SYNCHROTRON APS BEAMLINE 14-BM-C 0.90 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.096 40 87.6 0.162 9.5 4.6 20023
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.096 2.18 65.6 0.223 2.8 1513
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.096 33.31 19995 1000 86.45 0.204 0.201 0.2125 0.261 0.2681 RANDOM 36.002
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.58 0.15 -3.01 -1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.789 r_dihedral_angle_4_deg 24.931 r_dihedral_angle_3_deg 15.835 r_dihedral_angle_1_deg 6.166 r_scangle_it 1.59 r_angle_refined_deg 1.169 r_scbond_it 1.035 r_mcangle_it 0.712 r_mcbond_it 0.421 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.789 r_dihedral_angle_4_deg 24.931 r_dihedral_angle_3_deg 15.835 r_dihedral_angle_1_deg 6.166 r_scangle_it 1.59 r_angle_refined_deg 1.169 r_scbond_it 1.035 r_mcangle_it 0.712 r_mcbond_it 0.421 r_nbtor_refined 0.299 r_nbd_refined 0.191 r_symmetry_vdw_refined 0.169 r_xyhbond_nbd_refined 0.13 r_symmetry_hbond_refined 0.113 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3386 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms 12
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction Crystal data collection HKL-2000 data reduction