Experiment: 2R0F

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1ULD	PDB ENTRY 1ULD

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	4.8	291	MPD, sodium citrate, pH4.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K

Crystal Properties
Matthews coefficient	Solvent content
4.27	71.18

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 112.375	α = 90
b = 112.375	β = 90
c = 175.664	γ = 120

Symmetry
Space Group	P 61 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2005-12-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	0.966	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	20	91.03	0.12	9.8	4.8		41642			11.828

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2	2.1	83.2		0.163	0.24	8	5.3	2432

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1ULD	2	14.84	41187	41187	2260	97.1	0.24301	0.24267	0.24949	RANDOM	32.148

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.03	0.01		0.03		-0.04

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.336
r_dihedral_angle_4_deg	16.348
r_dihedral_angle_3_deg	11.874
r_scangle_it	3.746
r_mcangle_it	3.256
r_scbond_it	2.329
r_dihedral_angle_1_deg	2.205
r_mcbond_it	2.176
r_angle_refined_deg	1.404
r_chiral_restr	0.455

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.336
r_dihedral_angle_4_deg	16.348
r_dihedral_angle_3_deg	11.874
r_scangle_it	3.746
r_mcangle_it	3.256
r_scbond_it	2.329
r_dihedral_angle_1_deg	2.205
r_mcbond_it	2.176
r_angle_refined_deg	1.404
r_chiral_restr	0.455
r_symmetry_vdw_refined	0.386
r_nbtor_refined	0.334
r_nbd_refined	0.237
r_symmetry_hbond_refined	0.225
r_xyhbond_nbd_refined	0.175
r_gen_planes_refined	0.009
r_bond_refined_d	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2626
Nucleic Acid Atoms
Solvent Atoms	238
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data scaling
XDS	data reduction
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.