☰ Navigation Tabs
Crystal Structure of Autoinhibited Form of Grp1 Arf GTPase Exchange Factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277.15 10-15% PEG 6000, 50 mM Tris, pH 8.0, 0.2 M Li2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.81 56.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.599 α = 90 b = 94.611 β = 90 c = 115.308 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-09-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.9791, 0.97872, 1.1627 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 99.88 6 73040 72844
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 20 68704 3652 99.72 0.20558 0.20366 0.2092 0.24106 RANDOM 33.482
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.91 -1.53 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.141 r_dihedral_angle_4_deg 17.201 r_dihedral_angle_3_deg 12.414 r_dihedral_angle_1_deg 4.995 r_scangle_it 2.468 r_scbond_it 1.633 r_mcangle_it 1.1 r_angle_refined_deg 1.074 r_mcbond_it 0.819 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.141 r_dihedral_angle_4_deg 17.201 r_dihedral_angle_3_deg 12.414 r_dihedral_angle_1_deg 4.995 r_scangle_it 2.468 r_scbond_it 1.633 r_mcangle_it 1.1 r_angle_refined_deg 1.074 r_mcbond_it 0.819 r_nbtor_refined 0.3 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.163 r_symmetry_hbond_refined 0.145 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5603 Nucleic Acid Atoms Solvent Atoms 807 Heterogen Atoms 128
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALEPACK data scaling SHARP phasing