☰ Navigation Tabs
Crystal Structure of Sterol Carrier Protein 2 Like 2 (SCP2-L2) from Aedes Aegypti
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 296 2 microl protein @ 10mg/ml was mixed with 2microl mother liquor consisting of 1.6 M sodium citrate, 5% glycerol, 100 mM Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.42 49.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.36 α = 90 b = 56.44 β = 119.4 c = 50.61 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 263 CCD BRUKER PROTEUM Montel 200 multilayer graded mirrors 2006-07-13 M SINGLE WAVELENGTH 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 98.8 0.073 25.8 3.5 24343 19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 93.8 0.117 4.9 1.5 2304
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.7 25 24589 24120 1225 98.09 0.2 0.198 0.2153 0.236 0.2353 RANDOM 17.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.54 0.61 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.334 r_dihedral_angle_3_deg 13.737 r_dihedral_angle_4_deg 8.988 r_dihedral_angle_1_deg 5.037 r_scangle_it 2.276 r_mcangle_it 1.826 r_scbond_it 1.537 r_angle_refined_deg 1.425 r_mcbond_it 1.353 r_nbtor_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.334 r_dihedral_angle_3_deg 13.737 r_dihedral_angle_4_deg 8.988 r_dihedral_angle_1_deg 5.037 r_scangle_it 2.276 r_mcangle_it 1.826 r_scbond_it 1.537 r_angle_refined_deg 1.425 r_mcbond_it 1.353 r_nbtor_refined 0.323 r_symmetry_hbond_refined 0.261 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.199 r_symmetry_vdw_refined 0.141 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1629 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 54
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction PROTEUM PLUS data collection