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Crystal structure of a designed full consensus ankyrin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MJO PDB entry 1MJO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 2.7M (NH4)2SO4, 0.1M Tris pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.28 45.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.48 α = 90 b = 74.48 β = 90 c = 50.99 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirror 2005-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 64.55 92.8 0.068 0.073 21.44 7.68 10232 -3 31.966
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 48.1 0.337 0.364 6.2 7.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1MJO 2.05 64.55 10232 10204 493 99.76 0.188 0.188 0.186 0.226 0.2043 RANDOM 26.279
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 0.51 1.02 -1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.102 r_dihedral_angle_4_deg 18.793 r_dihedral_angle_3_deg 14.197 r_dihedral_angle_1_deg 4.798 r_scangle_it 2.931 r_scbond_it 1.889 r_angle_refined_deg 1.109 r_mcangle_it 1.106 r_mcbond_it 0.642 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.102 r_dihedral_angle_4_deg 18.793 r_dihedral_angle_3_deg 14.197 r_dihedral_angle_1_deg 4.798 r_scangle_it 2.931 r_scbond_it 1.889 r_angle_refined_deg 1.109 r_mcangle_it 1.106 r_mcbond_it 0.642 r_nbtor_refined 0.298 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.206 r_symmetry_hbond_refined 0.182 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.067 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1161 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 20
Software Software Software Name Purpose XSCALE data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction