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Crystal structure of a dimeric ferredoxin-like protein (bb1511) from bordetella bronchiseptica rb50 at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 NANODROP, 0.2M Li2SO4, 2.5M NaCl, 0.1M Acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.34 47.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.82 α = 90 b = 50.82 β = 90 c = 142.17 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97926 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 28.433 99.7 0.087 9.74 7.04 17516 23.22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.7 0.618 2.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 28.433 17466 881 99.76 0.18 0.18 0.177 0.1794 0.236 0.238 RANDOM 21.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 0.6 1.21 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21.7 r_dihedral_angle_4_deg 18.065 r_dihedral_angle_3_deg 13.841 r_scangle_it 7.891 r_scbond_it 6.312 r_dihedral_angle_1_deg 6.169 r_mcangle_it 3.494 r_mcbond_it 2.772 r_angle_refined_deg 1.678 r_angle_other_deg 0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 21.7 r_dihedral_angle_4_deg 18.065 r_dihedral_angle_3_deg 13.841 r_scangle_it 7.891 r_scbond_it 6.312 r_dihedral_angle_1_deg 6.169 r_mcangle_it 3.494 r_mcbond_it 2.772 r_angle_refined_deg 1.678 r_angle_other_deg 0.95 r_mcbond_other 0.705 r_symmetry_vdw_other 0.239 r_nbd_refined 0.216 r_nbtor_refined 0.198 r_symmetry_vdw_refined 0.197 r_nbd_other 0.193 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.143 r_chiral_restr 0.093 r_nbtor_other 0.093 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1563 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction