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Crystal structure of an EHD ATPase involved in membrane remodelling
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 277 3% PEG2000 MME, 50mM MES, 4mM MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 6.4
Crystal Properties Matthews coefficient Solvent content 2.93 58.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.851 α = 90 b = 134.653 β = 106.05 c = 56.068 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 DOUBLE CRYSTAL MONOCHROMATOR AND A TOROIDAL FOCUSING MIRROR 2005-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 20 96.4 0.0708 11.4 3.4 12251 65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.2 93.8 0.036 4.5 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.1 19.96 12251 12091 623 98.7 0.236 0.234 0.2307 0.276 0.2744 RANDOM 59.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.09 0.96 -3.01 -2.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.127 r_dihedral_angle_3_deg 21.24 r_dihedral_angle_4_deg 19.157 r_dihedral_angle_1_deg 5.347 r_angle_refined_deg 1.119 r_mcangle_it 0.546 r_scangle_it 0.428 r_nbtor_refined 0.339 r_mcbond_it 0.336 r_symmetry_vdw_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.127 r_dihedral_angle_3_deg 21.24 r_dihedral_angle_4_deg 19.157 r_dihedral_angle_1_deg 5.347 r_angle_refined_deg 1.119 r_mcangle_it 0.546 r_scangle_it 0.428 r_nbtor_refined 0.339 r_mcbond_it 0.336 r_symmetry_vdw_refined 0.323 r_nbd_refined 0.276 r_scbond_it 0.254 r_xyhbond_nbd_refined 0.215 r_symmetry_hbond_refined 0.177 r_metal_ion_refined 0.115 r_chiral_restr 0.08 r_bond_refined_d 0.019 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3795 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing