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Crystal structure of human XLF/Cernunnos, a non-homologous end-joining factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 23% PEG 6000, 0.1M Bis-Tris-Propane, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291.0K
Crystal Properties Matthews coefficient Solvent content 2.72 54.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.736 α = 90 b = 92.913 β = 106.22 c = 103.693 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 toroidal mirror is curved by a pneumatically operated bending mechanism and focusses the beam in both the horizontal and vertica 2007-05-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9807 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.8 0.079 0.079 12 7.1 51827 51723 43
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.35 99.6 0.302 0.0302 6.3 3438
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 37.01 45931 45931 2000 100 0.18478 0.18478 0.18238 0.1797 0.23891 0.2366 RANDOM 57.743
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.02 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.123 r_dihedral_angle_3_deg 17.955 r_dihedral_angle_4_deg 16.373 r_dihedral_angle_1_deg 6.134 r_scangle_it 4.245 r_mcangle_it 3.512 r_scbond_it 3.174 r_mcbond_it 2.543 r_angle_refined_deg 1.431 r_nbtor_refined 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.123 r_dihedral_angle_3_deg 17.955 r_dihedral_angle_4_deg 16.373 r_dihedral_angle_1_deg 6.134 r_scangle_it 4.245 r_mcangle_it 3.512 r_scbond_it 3.174 r_mcbond_it 2.543 r_angle_refined_deg 1.431 r_nbtor_refined 0.29 r_symmetry_hbond_refined 0.216 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.194 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7113 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ProDC data collection DENZO data reduction SCALEPACK data scaling PHENIX phasing