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Adenovirus AD35 fibre head
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H7Z PDB ENTRY 1H7Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 294 Protein in 20mM Tris-HCl, 200mM NaCl, 5mM DTT, reservoir: 30% PEG1000, 0.2M MgBr2, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.69 27.3 5.1 75.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.831 α = 90 b = 87.831 β = 90 c = 53.897 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-01-01 M SINGLE WAVELENGTH 2 1 100 CCD ADSC QUANTUM 210 2007-01-01
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1.0 NSRRC BL13B1 2 SYNCHROTRON NSRRC BEAMLINE BL13C1 1.0 NSRRC BL13C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 30 92.8 0.082 9.4 4.7 9568 9568 10.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.09 58 0.501 2.3 600
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT throughtout PDB ENTRY 1H7Z 2.02 25.4 9049 9049 946 89.2 0.216 0.216 0.2 0.1999 0.257 0.2573 random 44.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.54 -7.54 15.079
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.6 c_angle_deg 1.55 c_improper_angle_d 0.92 c_bond_d 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1435 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling EPMR phasing CNS refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling