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Crystal structure of a putative redox protein (lsei_0423) from lactobacillus casei atcc 334 at 1.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 NANODROP, 2.0M (NH4)2SO4, 0.1M Tris-HCl pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.43 64.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.99 α = 90 b = 81.99 β = 90 c = 129.88 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97917, 0.97891 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29.761 99.6 0.04 18.13 71427 -3 24.94
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 97.4 0.517 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 29.761 71338 3613 99.85 0.136 0.135 0.1426 0.159 0.1659 RANDOM 15.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.795 r_dihedral_angle_4_deg 13.592 r_dihedral_angle_3_deg 11.056 r_sphericity_free 8.828 r_scangle_it 6.453 r_dihedral_angle_1_deg 5.724 r_sphericity_bonded 5.326 r_scbond_it 4.858 r_mcangle_it 3.669 r_mcbond_it 2.924
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.795 r_dihedral_angle_4_deg 13.592 r_dihedral_angle_3_deg 11.056 r_sphericity_free 8.828 r_scangle_it 6.453 r_dihedral_angle_1_deg 5.724 r_sphericity_bonded 5.326 r_scbond_it 4.858 r_mcangle_it 3.669 r_mcbond_it 2.924 r_rigid_bond_restr 2.55 r_mcbond_other 2.043 r_angle_refined_deg 1.538 r_angle_other_deg 0.97 r_symmetry_vdw_other 0.272 r_symmetry_vdw_refined 0.226 r_nbd_refined 0.222 r_symmetry_hbond_refined 0.208 r_nbd_other 0.196 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.172 r_xyhbond_nbd_other 0.146 r_chiral_restr 0.091 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2162 Nucleic Acid Atoms Solvent Atoms 431 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SHELXD phasing autoSHARP phasing