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CRYSTAL STRUCTURE OF A TYW3 METHYLTRANSFERASE-LIKE PROTEIN (AF_2059) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 1.95 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 NANODROP, 0.09M Citric acid, 0.01M Trisodium citrate, 20% MPD, Additive: 0.01 M Phenol, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 4.0 2 VAPOR DIFFUSION, SITTING DROP 4.1 293 NANODROP, 0.08M Citric acid, 0.02M Trisodium citrate, 22% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 4.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.334 α = 90 b = 59.334 β = 90 c = 109.102 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat collimating mirror, toroid focusing mirror 2004-07-31 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing) 2004-07-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.979105 SSRL BL9-2 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.885567, 0.979508, 0.979224 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.95 28.628 99.8 0.088 0.088 7.5 3.7 27454 24.94
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.95 2.06 99.8 0.756 0.756 1 3.8 3997
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 28.628 27438 1377 99.77 0.201 0.199 0.2058 0.253 0.2608 RANDOM 25.35
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 1.41 -2.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.5 r_dihedral_angle_4_deg 20.398 r_dihedral_angle_3_deg 14.935 r_scangle_it 8.115 r_dihedral_angle_1_deg 6.561 r_scbond_it 5.868 r_mcangle_it 3.498 r_mcbond_it 2.309 r_angle_refined_deg 1.495 r_angle_other_deg 0.825
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.5 r_dihedral_angle_4_deg 20.398 r_dihedral_angle_3_deg 14.935 r_scangle_it 8.115 r_dihedral_angle_1_deg 6.561 r_scbond_it 5.868 r_mcangle_it 3.498 r_mcbond_it 2.309 r_angle_refined_deg 1.495 r_angle_other_deg 0.825 r_mcbond_other 0.553 r_nbd_refined 0.211 r_symmetry_vdw_other 0.184 r_nbtor_refined 0.181 r_nbd_other 0.162 r_symmetry_hbond_refined 0.156 r_xyhbond_nbd_refined 0.125 r_symmetry_vdw_refined 0.104 r_nbtor_other 0.09 r_chiral_restr 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2876 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling XSCALE data scaling PDB_EXTRACT data extraction SHARP phasing Blu-Ice data collection XDS data reduction SHELXD phasing