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Structure of the Cu(II) form of the M51A mutant of amicyanin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.5 293 2.5-3 M phosphate, 10 mg/ml amicyanin, pH 5.5, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.84 32.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.36 α = 90 b = 55.39 β = 94.82 c = 27.01 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.90000 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.89 30 83.3 0.04 27.2 3.9 52990 52978
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.89 0.91 41.2 0.183 7.7 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO FREE R 0.89 30 52978 52978 2671 0.1109 0.1109 0.1096 0.1348 0.1529 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 6 790 1006.56
RMS Deviations Key Refinement Restraint Deviation s_zero_chiral_vol 0.118 s_non_zero_chiral_vol 0.11 s_approx_iso_adps 0.091 s_anti_bump_dis_restr 0.068 s_similar_adp_cmpnt 0.038 s_angle_d 0.033 s_from_restr_planes 0.0325 s_bond_d 0.016 s_rigid_bond_adp_cmpnt 0.006 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 829 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 6
Software Software Software Name Purpose SHELX refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHELX phasing SHELXL-97 refinement