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Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JI7
Crystallization Crystal Properties Matthews coefficient Solvent content 3.15 60.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.62 α = 90 b = 122.62 β = 90 c = 53.586 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 90 100 0.062 17.6 5 29148
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.64 100 0.479 4.9 2881
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JI7 2.56 20 29071 1473 99.8 0.213 0.211 0.2085 0.252 0.2474 RANDOM 57.141
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.49 -0.75 -1.49 2.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.519 r_dihedral_angle_3_deg 14.727 r_dihedral_angle_4_deg 11.889 r_scangle_it 8.323 r_mcangle_it 6.63 r_scbond_it 5.56 r_mcbond_it 4.62 r_dihedral_angle_1_deg 3.027 r_angle_refined_deg 1.419 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.519 r_dihedral_angle_3_deg 14.727 r_dihedral_angle_4_deg 11.889 r_scangle_it 8.323 r_mcangle_it 6.63 r_scbond_it 5.56 r_mcbond_it 4.62 r_dihedral_angle_1_deg 3.027 r_angle_refined_deg 1.419 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.229 r_symmetry_hbond_refined 0.205 r_nbd_refined 0.198 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.124 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5197 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction