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Crystal structure of EhuB in complex with ectoine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 273 sodium acetate, PEG, CdCl2, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.45 49.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.365 α = 90 b = 57.365 β = 90 c = 161.883 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 97.3 0.118 13.5 21659
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 98.6 0.391 1089
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 20 21600 1113 97.23 0.229 0.228 0.2264 0.249 0.2498 RANDOM 28.377
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.38 1.38 -2.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.132 r_dihedral_angle_3_deg 16.313 r_dihedral_angle_4_deg 13.228 r_dihedral_angle_1_deg 5.491 r_scangle_it 2.825 r_scbond_it 1.658 r_angle_refined_deg 1.225 r_mcangle_it 1.012 r_mcbond_it 0.601 r_metal_ion_refined 0.439
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.132 r_dihedral_angle_3_deg 16.313 r_dihedral_angle_4_deg 13.228 r_dihedral_angle_1_deg 5.491 r_scangle_it 2.825 r_scbond_it 1.658 r_angle_refined_deg 1.225 r_mcangle_it 1.012 r_mcbond_it 0.601 r_metal_ion_refined 0.439 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.255 r_symmetry_hbond_refined 0.215 r_nbd_refined 0.192 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1906 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 14
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection AMoRE phasing